Index

A

analyse_file() (in module matmmextract.preprocess.cc_license) append_line() (in module matmmextract.shared.doi_utils)

append_log() (in module matmmextract.shared.downloader) attempted_url (DownloadResult attribute)

B

build() (in module matmmextract.inference.dataset_builder) build_candidate_urls() (in module matmmextract.elsevier.downloader) (in module matmmextract.springer.downloader)

build_crop_csv() (in module matmmextract.inference.crop_csv_builder) build_image_map() (in module matmmextract.elsevier.extractor) BuildResult (class in matmmextract.inference.dataset_builder)

C

captioner() (in module matmmextract.inference.captioner_azure) (in module matmmextract.inference.captioner_gemini) CaptionResult (class in matmmextract.inference.captioner_azure) (class in matmmextract.inference.captioner_gemini)

clean() (in module matmmextract.inference.cleaner) CleanResult (class in matmmextract.inference.cleaner) copy_xmls_by_filename() (in module matmmextract.preprocess.pipeline) crop() (in module matmmextract.inference.cropper) CropResult (class in matmmextract.inference.cropper)

D

deleted_dirs (CleanResult attribute) deleted_files (CleanResult attribute) detect() (in module matmmextract.inference.detector) DetectionResult (class in matmmextract.inference.detector) df (FetchResult attribute) doi_to_filename() (in module matmmextract.shared.doi_utils)

download_all() (in module matmmextract.elsevier.downloader) (in module matmmextract.springer.downloader) download_one() (in module matmmextract.shared.downloader) downloaded_image_name (DownloadResult attribute) DownloadResult (class in matmmextract.shared.downloader) drop_duplicate_dois() (in module matmmextract.preprocess.pipeline)

E

error (DownloadResult attribute) extension_from_url() (in module matmmextract.shared.downloader) extract_all() (in module matmmextract.elsevier.extractor) (in module matmmextract.springer.extractor)

extract_figures() (in module matmmextract.elsevier.extractor) (in module matmmextract.springer.extractor) extract_reference_sentences() (in module matmmextract.elsevier.extractor) (in module matmmextract.springer.extractor)

F

failed (CropResult attribute) (DetectionResult attribute) (FetchResult attribute), [1] fetch() (in module matmmextract.openalex.fetcher) fetch_all() (in module matmmextract.elsevier.fetcher) (in module matmmextract.springer.fetcher) fetch_elsevier() (in module matmmextract.openalex.fetcher) fetch_fulltext_xml() (in module matmmextract.elsevier.fetcher) (in module matmmextract.springer.fetcher) fetch_springer() (in module matmmextract.openalex.fetcher)

FetchResult (class in matmmextract.elsevier.fetcher) (class in matmmextract.openalex.fetcher) (class in matmmextract.springer.fetcher) filename_to_doi() (in module matmmextract.shared.doi_utils) filter_by_publisher() (in module matmmextract.preprocess.pipeline) filter_figures_cc_by() (in module matmmextract.preprocess.cc_license) filter_open_access() (in module matmmextract.preprocess.pipeline) find_duplicate_dois() (in module matmmextract.preprocess.pipeline) find_images() (in module matmmextract.inference.detector) flatten_images() (in module matmmextract.preprocess.pipeline)

G

get_merged_paragraphs() (in module matmmextract.elsevier.extractor)

get_pii_from_doi() (in module matmmextract.elsevier.fetcher)

I

image_url (DownloadResult attribute)

K

kept (CleanResult attribute)

L

load_csvs() (in module matmmextract.preprocess.pipeline) load_download_log() (in module matmmextract.shared.downloader)

load_set() (in module matmmextract.shared.doi_utils) local_path (DownloadResult attribute) log_path (BuildResult attribute)

M

matmmextract.elsevier.downloader module matmmextract.elsevier.extractor module matmmextract.elsevier.fetcher module matmmextract.inference.captioner_azure module matmmextract.inference.captioner_gemini module matmmextract.inference.cleaner module matmmextract.inference.crop_csv_builder module matmmextract.inference.cropper module matmmextract.inference.dataset_builder module matmmextract.inference.detector module matmmextract.openalex.fetcher module matmmextract.preprocess.cc_license module matmmextract.preprocess.pipeline module matmmextract.shared.doi_utils module matmmextract.shared.downloader module

matmmextract.shared.sentence_utils module matmmextract.springer.downloader module matmmextract.springer.extractor module matmmextract.springer.fetcher module module matmmextract.elsevier.downloader matmmextract.elsevier.extractor matmmextract.elsevier.fetcher matmmextract.inference.captioner_azure matmmextract.inference.captioner_gemini matmmextract.inference.cleaner matmmextract.inference.crop_csv_builder matmmextract.inference.cropper matmmextract.inference.dataset_builder matmmextract.inference.detector matmmextract.openalex.fetcher matmmextract.preprocess.cc_license matmmextract.preprocess.pipeline matmmextract.shared.doi_utils matmmextract.shared.downloader matmmextract.shared.sentence_utils matmmextract.springer.downloader matmmextract.springer.extractor matmmextract.springer.fetcher move_xmls_by_doi() (in module matmmextract.preprocess.pipeline)

N

n_crops (CropResult attribute) n_error (CaptionResult attribute), [1] n_has_caption (BuildResult attribute) n_images (BuildResult attribute) (DetectionResult attribute) n_matched (BuildResult attribute) n_no_detections (CropResult attribute) n_no_json (BuildResult attribute)

n_no_panel (BuildResult attribute) n_saved (DetectionResult attribute) n_skipped (CaptionResult attribute), [1] (CropResult attribute) n_skipped_pattern (BuildResult attribute) n_success (CaptionResult attribute), [1] n_total (CaptionResult attribute), [1] next_name_allocator() (in module matmmextract.shared.downloader)

O

output_csv (BuildResult attribute) (FetchResult attribute), [1], [2]

output_dir (CaptionResult attribute), [1] (CropResult attribute) (DetectionResult attribute)

P

process_file() (in module matmmextract.elsevier.extractor) (in module matmmextract.springer.extractor)

prune_images_without_captions() (in module matmmextract.preprocess.pipeline) publisher_counts() (in module matmmextract.preprocess.pipeline)

R

REDISTRIB_RIGHTS (in module matmmextract.preprocess.cc_license) resolve_image_url() (in module matmmextract.elsevier.extractor) (in module matmmextract.springer.extractor)

resolve_weights() (in module matmmextract.inference.detector) row_index (DownloadResult attribute) run() (in module matmmextract.preprocess.pipeline) run_downloads() (in module matmmextract.shared.downloader)

S

save_csv() (in module matmmextract.preprocess.pipeline) scan_directory() (in module matmmextract.preprocess.cc_license) skipped_missing (CleanResult attribute)

split_sentences() (in module matmmextract.shared.sentence_utils) status (DownloadResult attribute) success (FetchResult attribute), [1]

T

total_fetched (FetchResult attribute)